COMPUTER MODELING OF BIOLOGICAL CONTAMINANTS IN A TRACK BIOSENSOR
DOI:
https://doi.org/10.32782/2450-8640.2022.1.1Keywords:
biological contaminants, nanopores, ion flows, biosensorsAbstract
Many solids in biology, medicine and technology are porous materials into which impurity solutions are capable of penetrating. Concerning the pore population, one has to distinguish on the one hand, between open and closed pores, and on the other hand, between macroscopic and nanoscopic pores. Open pores are accessible from the surface by non-diffusive capillarity percolation processes or micro-capillary diffusion; closed pores that do not have any direct connection to the outside world are accessible from the outside only by diffusion. The transition from macroscopic (where fluid dynamics and capillarity hold) to nanoscopic (where nanofluidics holds) pores takes place when the pore radius is of a similar magnitude to the Debye length. Creation of sensor systems for detecting extremely low concentrations of biological contaminants in liquid media is the most important task of bio-nanotechnologies. Since such systems are in great demand, it is necessary to find ways to make such devices as cheap and simple as possible while ensuring their high sensitivity. In this work, using computer simulation, we demonstrate the possibility of creating biosensors based on the use of measurements of the simplest physical characteristics. It is shown that the sizes of particles that pollute the environment and their charge can serve as discriminating parameters that allow one to detect the presence of such particles. To conduct a computer experiment, a model of a track biosensor was developed.
References
Bondaruk Yu., Fink D., Kiv A., Donchev I. Simulation of the passage of ion flows through nanotracks, International Journal of Advanced Computer Technology (IJACT), 2020, 9: 1-4.
Algov D.I., Feiertag A., Shikler R., Alfonta L. Sensitive enzymatic determination of neurotransmitters in artificial sweat. Biosens. Bioelectron. 2022, 210: 114264.
Three approaches towards ion track-based biosensors appear to be feasible. The development of the first one began a decade ago / Strategies towards advanced ion track based biosensors: (a) Siwy Z., Trofin L., Kohli P., Baker L.A., Trautmann C., Martin C.R. Protein biosensors based on functionalized conical gold nanotubes. J. Am. Chem. Soc. 2005, 127: 5000-5001; (b) Martin C.R., Siwy Z.S. Chemistry: Learning nature's way: Biosensing with synthetic nanopores. Science 2007, 317: 331-332.
Fink D., Klinkovich I., Bukelman O., Marks R.S., Kiv A., Fuks D., Fahrner W.R., Alfonta L. Glucose determination using a re-usable enzyme-modified membrane sensor. Biosens. Bioelectron. 2009, 24: 2702-2706.
Fink D., Vacik J., Alfonta L., Kiv A., Mandabi Y., Muñoz G. H. Optimization of transport processes in etched track-based biosensors. Funnel-type etched ion tracks in polymers. Radiat. Eff. Def. Solids, 2012, 167: 548-568.
García-Arellano H., Muñoz G.H., Fink D., Vacik J., Hnatowicz V., Alfonta L., Kiv A. Dependence of yield of nuclear track-biosensors on track radius and analyte concentration. Nucl. Instr. Meth. Phys. Res. B 2018, 420: 69-75.
Donchev I., Kavetskyy T., Mushynska O., Zubrytska O., Briukhovetska I., Pryima A., Kovalchuk H., Hoivanovych N., Kropyvnytska L., Pavlyshak Y., Skrobach T., Kossak G., Stakhiv V., Monastyrska S., Kiv A. Computer model of track biosensor. Semicond. Phys. Quant. Electron. Optoelectron. 2022, 25(4): 441-445.
Mykytenko N., Fink D., Kiv A. Computer modeling of ion current pulsations in trackcontaining foils. J. Comput. Sci. 2015, 6: 34-39.
Pan J, Ren D. Quorum sensing inhibitors: a patent overview. Therapeutic Patents. 2009, 19(11): 1581-1601.
Fink D., Muñoz G.H., García H.A., Vacik J., Hnatowicz V., Kiv A., Alfonta L. Ion track etching revisited: I. Correlations between track parameters in aged polymers. Nucl. Instr. Meth. Phys. Res. B 2018, 420: 57-68.
Schiedt B. Characterization and application of ion track-etched nanopores. PhD Thesis at the Ruperto-Carola University of Heidelberg, Germany, 2007, 124.